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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16284 and 16285 are separated by 374 nucleotides
16285 and 16286 are separated by 194 nucleotides
16286 and 16287 are separated by 3116 nucleotides
16287 and 16288 are separated by 610 nucleotides
mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14,684 to 15,975
16284
mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077
16285
mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18,272 to 19,315
16286
mRNA_7919: 16287 - K01489 cdd, CDA cytidine deaminase, at 22,432 to 23,509
16287
mRNA_7920: 16288 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 24,120 to 24,922
16288
Group
Condition
mRNA
_7916
mRNA
_7917
mRNA
_7918
mRNA
_7919
mRNA
_7920
16284
16285
16286
16287
16288
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-0.2
-1.5
+0.1
auxotrophy
YNB Glucose
-0.8
-0.3
-0.3
-0.7
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
-0.1
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.2
-0.6
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-2.4
-0.1
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.2
-0.3
-0.4
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.3
+0.4
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.3
-0.3
-0.0
growth on ypd
YPD
-0.8
+0.1
-0.1
+0.1
+0.7
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.5
-0.4
+0.0
auxotrophy
Dropout Complete
-0.3
-0.1
+0.1
-0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.6
+0.0
+0.8
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.2
+0.5
+0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.0
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
+0.1
+0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.3
+0.2
+0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.5
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
-0.1
+0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.2
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.6
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.2
+0.3
+0.5
-0.1
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