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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16298 and 16299 are separated by 1476 nucleotides
16299 and 16300 are separated by 322 nucleotides
16300 and 16301 are separated by 287 nucleotides
16301 and 16302 are separated by 461 nucleotides
mRNA_7930: 16298 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 43,652 to 44,554
16298
mRNA_7931: 16299 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 46,031 to 46,898
16299
mRNA_7932: 16300 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 47,221 to 48,247
16300
mRNA_7933: 16301 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 48,535 to 49,423
16301
mRNA_7934: 16302 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 49,885 to 50,735
16302
Group
Condition
mRNA
_7930
mRNA
_7931
mRNA
_7932
mRNA
_7933
mRNA
_7934
16298
16299
16300
16301
16302
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.2
-0.2
-0.2
-1.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.3
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.6
-0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
-0.2
-0.0
-0.2
growth on ypd
YPD
-0.2
+0.4
+0.1
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
+0.7
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.2
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
+1.0
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
+0.6
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
+1.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.3
+0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
+0.3
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.5
+0.3
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
+0.5
+0.2
+0.1
auxotrophy
YNB Glucose
+0.3
+0.3
+0.4
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.5
+0.4
+0.4
+0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.4
+0.6
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.3
+0.4
+0.4
-0.0
auxotrophy
Dropout Complete
+0.4
+0.2
+0.5
+0.3
+0.4
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