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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16300 and 16301 are separated by 287 nucleotides
16301 and 16302 are separated by 461 nucleotides
16302 and 16303 are separated by 774 nucleotides
16303 and 16304 are separated by 383 nucleotides
mRNA_7932: 16300 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 47,221 to 48,247
16300
mRNA_7933: 16301 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 48,535 to 49,423
16301
mRNA_7934: 16302 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 49,885 to 50,735
16302
mRNA_7935: 16303 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 51,510 to 51,923
16303
mRNA_7936: 16304 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 52,307 to 53,072
16304
Group
Condition
mRNA
_7932
mRNA
_7933
mRNA
_7934
mRNA
_7935
mRNA
_7936
16300
16301
16302
16303
16304
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-1.0
N.D.
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.2
N.D.
+0.0
growth on ypd
YPD
+0.1
-0.1
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
-0.0
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
+0.0
N.D.
+0.2
auxotrophy
YNB Glucose
+0.4
+0.1
+0.4
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.2
-0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
+0.4
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.2
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.3
-0.0
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.2
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.0
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
+0.4
-0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.3
-0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
+0.2
-0.1
N.D.
-0.1
auxotrophy
Dropout Complete
+0.5
+0.3
+0.4
N.D.
-0.1
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