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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16308 and 16309 are separated by 241 nucleotides
16309 and 16310 are separated by 157 nucleotides
16310 and 16311 are separated by 405 nucleotides
16311 and 16312 are separated by 382 nucleotides
mRNA_7940: 16308 - Hypothetical Protein, at 60,107 to 61,381
16308
mRNA_7941: 16309 - Hypothetical Protein, at 61,623 to 61,945
16309
mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62,103 to 65,141
16310
mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65,547 to 69,135
16311
mRNA_7944: 16312 - Hypothetical Protein, at 69,518 to 70,390
16312
Group
Condition
mRNA
_7940
mRNA
_7941
mRNA
_7942
mRNA
_7943
mRNA
_7944
16308
16309
16310
16311
16312
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.2
-0.7
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.4
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
-0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.6
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
+0.0
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.5
-0.0
+0.2
auxotrophy
Dropout Complete
-0.0
-0.1
+0.2
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.3
-0.5
+0.2
growth on ypd
YPD
+0.1
+0.3
-0.5
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose
+0.2
-0.0
+0.1
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
-0.2
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.2
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.7
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
-0.7
+0.2
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
+0.2
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.3
+0.0
+0.7
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.0
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.5
+0.3
+0.2
+0.1
+0.2
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