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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16311 and 16312 are separated by 382 nucleotides
16312 and 16313 are separated by 239 nucleotides
16313 and 16314 are separated by 423 nucleotides
16314 and 16315 are separated by 435 nucleotides
mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65,547 to 69,135
16311
mRNA_7944: 16312 - Hypothetical Protein, at 69,518 to 70,390
16312
mRNA_7945: 16313 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 70,630 to 71,509
16313
mRNA_7946: 16314 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 71,933 to 72,812
16314
mRNA_7947: 16315 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 73,248 to 74,114
16315
Group
Condition
mRNA
_7943
mRNA
_7944
mRNA
_7945
mRNA
_7946
mRNA
_7947
16311
16312
16313
16314
16315
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.4
-1.1
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.3
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
+0.2
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.1
+0.0
-0.1
auxotrophy
Dropout Complete
-0.4
+0.5
+0.4
-0.1
-0.0
auxotrophy
YNB Glucose
-0.3
+0.3
+0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.3
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.1
+0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-0.1
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.4
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
+0.2
+0.1
-0.0
growth on ypd
YPD
+0.0
+0.2
+0.4
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.8
-0.3
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.7
+0.0
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
+0.3
+0.1
-0.1
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