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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16316 and 16317 are separated by 413 nucleotides
16317 and 16318 are separated by 506 nucleotides
16318 and 16319 are separated by 550 nucleotides
16319 and 16320 are separated by 251 nucleotides
mRNA_7948: 16316 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 74,444 to 75,195
16316
mRNA_7949: 16317 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 75,609 to 76,482
16317
mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76,989 to 79,257
16318
mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79,808 to 82,314
16319
mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82,566 to 84,687
16320
Group
Condition
mRNA
_7948
mRNA
_7949
mRNA
_7950
mRNA
_7951
mRNA
_7952
16316
16317
16318
16319
16320
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
-1.5
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.3
-0.3
+0.2
-0.2
auxotrophy
Dropout Complete
-0.0
-0.2
-0.3
+0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
-0.9
+0.3
+0.1
growth on oleic acid
YNB Glucose
-0.9
+0.2
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.3
+0.1
-0.3
auxotrophy
YNB Glucose
-0.5
-0.3
+0.4
+0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.3
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.1
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.7
+0.3
-1.0
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.1
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.5
+0.0
-0.0
growth on ypd
YPD
-0.5
+0.1
+0.1
+0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
+0.5
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
+0.5
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.3
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.0
+0.5
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
+0.1
+0.3
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.1
+2.4
-0.9
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
+0.2
+0.5
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
+0.1
+1.2
+0.3
-0.0
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