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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16319 and 16320 are separated by 251 nucleotides
16320 and 16321 are separated by 1033 nucleotides
16321 and 16322 are separated by 544 nucleotides
16322 and 16323 are separated by 434 nucleotides
mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79,808 to 82,314
16319
mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82,566 to 84,687
16320
mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85,721 to 88,276
16321
mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88,821 to 92,965
16322
mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93,400 to 95,869
16323
Group
Condition
mRNA
_7951
mRNA
_7952
mRNA
_7953
mRNA
_7954
mRNA
_7955
16319
16320
16321
16322
16323
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.1
-0.3
-1.0
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
+0.2
-0.2
-0.0
auxotrophy
Dropout Complete
+0.0
-0.3
+0.2
+0.0
-0.2
auxotrophy
YNB Glucose
+0.3
-0.6
+0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
+0.2
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.2
+0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
-0.0
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.0
-0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.3
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.2
+0.3
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
+0.1
+0.4
+0.2
growth on ypd
YPD
+0.6
+0.1
+0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+0.5
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.5
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.4
+0.2
+0.3
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