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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16321 and 16322 are separated by 544 nucleotides
16322 and 16323 are separated by 434 nucleotides
16323 and 16324 are separated by 833 nucleotides
16324 and 16325 are separated by 267 nucleotides
mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85,721 to 88,276
16321
mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88,821 to 92,965
16322
mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93,400 to 95,869
16323
mRNA_7956: 16324 - K03146 THI4, THI1 thiamine thiazole synthase, at 96,703 to 99,029
16324
mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99,297 to 100,218
16325
Group
Condition
mRNA
_7953
mRNA
_7954
mRNA
_7955
mRNA
_7956
mRNA
_7957
16321
16322
16323
16324
16325
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.0
-0.7
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
-0.2
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.4
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
+0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
+0.0
-0.1
-0.3
growth on ypd
YPD
+0.1
-0.0
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.0
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
-0.1
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.1
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.2
-0.2
+0.2
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
+0.2
-0.0
auxotrophy
Dropout Complete
+0.2
+0.0
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
+0.0
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
-0.2
+0.2
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.0
+0.1
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
+0.3
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.2
-0.0
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
+0.2
-0.1
+0.2
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