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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16323 and 16324 are separated by 833 nucleotides
16324 and 16325 are separated by 267 nucleotides
16325 and 16326 are separated by 574 nucleotides
16326 and 16327 are separated by 395 nucleotides
mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93,400 to 95,869
16323
mRNA_7956: 16324 - K03146 THI4, THI1 thiamine thiazole synthase, at 96,703 to 99,029
16324
mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99,297 to 100,218
16325
mRNA_7958: 16326 - Hypothetical Protein, at 100,793 to 101,343
16326
mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560
16327
Group
Condition
mRNA
_7955
mRNA
_7956
mRNA
_7957
mRNA
_7958
mRNA
_7959
16323
16324
16325
16326
16327
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.2
-0.0
N.D.
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
-0.6
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.2
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
-0.2
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.0
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.3
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.0
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
-0.1
N.D.
+0.3
growth on ypd
YPD
-0.1
+0.2
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
-0.2
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
+0.2
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.1
N.D.
+0.0
auxotrophy
Dropout Complete
-0.2
+0.2
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose
-0.2
+0.2
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.2
N.D.
+0.2
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