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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16325 and 16326 are separated by 574 nucleotides
16326 and 16327 are separated by 395 nucleotides
16327 and 16328 are separated by 244 nucleotides
16328 and 16329 are separated by 199 nucleotides
mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99,297 to 100,218
16325
mRNA_7958: 16326 - Hypothetical Protein, at 100,793 to 101,343
16326
mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560
16327
mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102,805 to 103,919
16328
mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104,119 to 104,997
16329
Group
Condition
mRNA
_7957
mRNA
_7958
mRNA
_7959
mRNA
_7960
mRNA
_7961
16325
16326
16327
16328
16329
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-1.1
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.8
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
-0.6
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.4
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.4
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.2
-0.5
+0.4
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.5
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
+0.0
-0.1
growth on ypd
YPD
-0.1
N.D.
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.3
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.0
+0.3
+0.1
auxotrophy
YNB Glucose
+0.2
N.D.
+0.3
+0.1
-0.1
auxotrophy
Dropout Complete
+0.2
N.D.
+0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.2
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.2
+0.2
+0.8
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