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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16326 and 16327 are separated by 395 nucleotides
16327 and 16328 are separated by 244 nucleotides
16328 and 16329 are separated by 199 nucleotides
16329 and 16330 are separated by 519 nucleotides
mRNA_7958: 16326 - Hypothetical Protein, at 100,793 to 101,343
16326
mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560
16327
mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102,805 to 103,919
16328
mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104,119 to 104,997
16329
mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105,517 to 106,511
16330
Group
Condition
mRNA
_7958
mRNA
_7959
mRNA
_7960
mRNA
_7961
mRNA
_7962
16326
16327
16328
16329
16330
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
-0.3
-0.3
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.8
+0.1
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
+0.1
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.5
+0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
+0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.2
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.0
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
+0.3
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.0
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.3
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.3
+0.1
-0.1
+0.3
growth on ypd
YPD
N.D.
+0.1
+0.2
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.3
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.2
+0.8
+0.4
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