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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16327 and 16328 are separated by 244 nucleotides
16328 and 16329 are separated by 199 nucleotides
16329 and 16330 are separated by 519 nucleotides
16330 and 16331 are separated by 257 nucleotides
mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560
16327
mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102,805 to 103,919
16328
mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104,119 to 104,997
16329
mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105,517 to 106,511
16330
mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106,769 to 107,651
16331
Group
Condition
mRNA
_7959
mRNA
_7960
mRNA
_7961
mRNA
_7962
mRNA
_7963
16327
16328
16329
16330
16331
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.3
-0.3
-0.7
-2.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.1
+0.0
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.1
+0.2
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
+0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.2
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
+0.4
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
+0.2
-0.1
+0.1
auxotrophy
Dropout Complete
+0.3
+0.1
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose
+0.3
+0.1
-0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
+0.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.1
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
+0.3
+0.2
+0.1
growth on ypd
YPD
+0.1
+0.2
+0.1
+0.4
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
+0.8
+0.4
+0.1
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