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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16328 and 16329 are separated by 199 nucleotides
16329 and 16330 are separated by 519 nucleotides
16330 and 16331 are separated by 257 nucleotides
16331 and 16332 are separated by 423 nucleotides
mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102,805 to 103,919
16328
mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104,119 to 104,997
16329
mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105,517 to 106,511
16330
mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106,769 to 107,651
16331
mRNA_7964: 16332 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 108,075 to 108,950
16332
Group
Condition
mRNA
_7960
mRNA
_7961
mRNA
_7962
mRNA
_7963
mRNA
_7964
16328
16329
16330
16331
16332
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
-0.7
-2.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.0
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.2
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.4
-0.0
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.2
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-0.2
+0.2
-0.0
auxotrophy
YNB Glucose
+0.1
-0.1
+0.2
+0.1
-0.0
auxotrophy
Dropout Complete
+0.1
-0.1
+0.3
-0.1
+0.0
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.1
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.1
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.4
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.2
+0.1
-0.1
growth on ypd
YPD
+0.2
+0.1
+0.4
+0.6
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.8
+0.4
+0.1
-0.2
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