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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16334 and 16335 are separated by 799 nucleotides
16335 and 16336 are separated by 27 nucleotides
16336 and 16337 are separated by 455 nucleotides
16337 and 16338 are separated by 269 nucleotides
mRNA_7966: 16334 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 110,681 to 111,565
16334
mRNA_7967: 16335 - Hypothetical Protein, at 112,365 to 112,943
16335
mRNA_7968: 16336 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 112,971 to 114,201
16336
mRNA_7969: 16337 - Hypothetical Protein, at 114,657 to 115,244
16337
mRNA_7970: 16338 - SUPERFAMILY--SSF144232, at 115,514 to 116,661
16338
Group
Condition
mRNA
_7966
mRNA
_7967
mRNA
_7968
mRNA
_7969
mRNA
_7970
16334
16335
16336
16337
16338
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.1
-0.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.2
-0.6
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.5
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
-0.1
-0.1
+0.0
growth on oleic acid
YNB Glucose
-0.0
-0.1
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
-0.1
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.2
-0.1
+0.0
auxotrophy
YNB Glucose
-0.2
+0.0
-0.2
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
-0.2
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.1
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
-0.2
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.0
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
+0.1
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.3
-0.1
+0.2
growth on ypd
YPD
+0.1
+0.3
+0.1
+0.0
-0.0
auxotrophy
Dropout Complete
-0.2
+0.5
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.4
+0.1
+0.4
+0.2
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