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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16338 and 16339 are separated by 292 nucleotides
16339 and 16340 are separated by 217 nucleotides
16340 and 16341 are separated by 560 nucleotides
16341 and 16342 are separated by 262 nucleotides
mRNA_7970: 16338 - SUPERFAMILY--SSF144232, at 115,514 to 116,661
16338
mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116,954 to 120,210
16339
mRNA_7972: 16340 - Hypothetical Protein, at 120,428 to 122,131
16340
mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122,692 to 128,410
16341
mRNA_7974: 16342 - Hypothetical Protein, at 128,673 to 129,137
16342
Group
Condition
mRNA
_7970
mRNA
_7971
mRNA
_7972
mRNA
_7973
mRNA
_7974
16338
16339
16340
16341
16342
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
-0.8
-1.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
-0.4
-0.6
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.1
-0.4
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.0
+0.1
-1.2
auxotrophy
YNB Glucose
-0.0
-0.0
-0.1
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.5
-1.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.0
-0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
-0.2
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
-0.1
-0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.1
-0.1
-0.3
auxotrophy
Dropout Complete
+0.3
-0.1
-0.0
-0.1
-0.4
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.2
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
+0.0
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
-0.8
+1.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-0.1
-0.7
+1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
-0.0
-0.1
+0.9
growth on ypd
YPD
-0.0
-0.1
-0.0
+0.2
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+0.1
-0.4
+1.4
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