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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16339 and 16340 are separated by 217 nucleotides
16340 and 16341 are separated by 560 nucleotides
16341 and 16342 are separated by 262 nucleotides
16342 and 16343 are separated by 587 nucleotides
mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116,954 to 120,210
16339
mRNA_7972: 16340 - Hypothetical Protein, at 120,428 to 122,131
16340
mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122,692 to 128,410
16341
mRNA_7974: 16342 - Hypothetical Protein, at 128,673 to 129,137
16342
mRNA_7975: 16343 - KOG0762 Mitochondrial carrier protein, at 129,725 to 131,537
16343
Group
Condition
mRNA
_7971
mRNA
_7972
mRNA
_7973
mRNA
_7974
mRNA
_7975
16339
16340
16341
16342
16343
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.8
-1.4
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.4
-0.6
-0.8
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.4
-0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
-0.3
-0.4
-0.3
auxotrophy
YNB Glucose
-0.0
-0.1
-0.3
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
+0.1
-1.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
-0.2
-0.3
-0.8
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.5
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.3
-0.1
-0.4
auxotrophy
Dropout Complete
-0.1
-0.0
-0.1
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.1
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.8
+1.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
-0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.7
+1.5
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.5
-1.0
+0.5
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.3
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.1
+0.9
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.4
+1.4
-0.5
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
-0.1
+0.3
+0.1
growth on ypd
YPD
-0.1
-0.0
+0.2
+1.2
+0.0
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