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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16341 and 16342 are separated by 262 nucleotides
16342 and 16343 are separated by 587 nucleotides
16343 and 16344 are separated by 405 nucleotides
16344 and 16345 are separated by 590 nucleotides
mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122,692 to 128,410
16341
mRNA_7974: 16342 - Hypothetical Protein, at 128,673 to 129,137
16342
mRNA_7975: 16343 - KOG0762 Mitochondrial carrier protein, at 129,725 to 131,537
16343
mRNA_7976: 16344 - BLAST carbohydrate-binding module family 13 protein [Schizo..., at 131,943 to 133,643
16344
mRNA_7977: 16345 - K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase, at 134,234 to 135,920
16345
Group
Condition
mRNA
_7973
mRNA
_7974
mRNA
_7975
mRNA
_7976
mRNA
_7977
16341
16342
16343
16344
16345
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
-0.8
+0.2
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.1
-0.2
+0.1
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.8
+0.3
+0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.1
+0.1
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.4
+0.3
-1.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-1.2
-0.1
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
-0.3
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.5
-0.1
-0.3
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.7
-0.1
-0.4
+0.5
auxotrophy
YNB Glucose
-0.3
-0.5
-0.2
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+1.5
-1.0
+0.6
-0.9
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.0
-0.0
+0.2
auxotrophy
Dropout Complete
-0.1
-0.4
-0.1
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
+0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+1.1
-0.6
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
+0.2
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.5
+0.6
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.9
-0.8
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+1.4
-0.5
+0.5
-0.2
growth on ypd
YPD
+0.2
+1.2
+0.0
+0.2
-0.1
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