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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16344 and 16345 are separated by 590 nucleotides
16345 and 16346 are separated by 324 nucleotides
16346 and 16347 are separated by 145 nucleotides
16347 and 16348 are separated by 234 nucleotides
mRNA_7976: 16344 - BLAST carbohydrate-binding module family 13 protein [Schizo..., at 131,943 to 133,643
16344
mRNA_7977: 16345 - K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase, at 134,234 to 135,920
16345
mRNA_7978: 16346 - K13341 PEX7, PTS2R peroxin-7, at 136,245 to 137,738
16346
mRNA_7979: 16347 - KOG0504 FOG Ankyrin repeat, at 137,884 to 138,763
16347
mRNA_7980: 16348 - KOG0550 Molecular chaperone (DnaJ superfamily), at 138,998 to 141,142
16348
Group
Condition
mRNA
_7976
mRNA
_7977
mRNA
_7978
mRNA
_7979
mRNA
_7980
16344
16345
16346
16347
16348
growth on oleic acid
YNB Oleic Acid
+0.4
-0.6
-4.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.1
-3.3
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-1.0
-2.3
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.6
-1.6
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.6
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.7
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.9
-0.6
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.3
-1.0
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.6
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.5
N.D.
-0.0
auxotrophy
YNB Glucose
-0.3
+0.4
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.5
-0.3
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
+0.5
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
+0.3
N.D.
+0.2
auxotrophy
Dropout Complete
+0.0
+0.3
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.2
+0.2
N.D.
+0.0
growth on ypd
YPD
+0.2
-0.1
+0.8
N.D.
+0.1
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