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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16345 and 16346 are separated by 324 nucleotides
16346 and 16347 are separated by 145 nucleotides
16347 and 16348 are separated by 234 nucleotides
16348 and 16349 are separated by 383 nucleotides
mRNA_7977: 16345 - K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase, at 134,234 to 135,920
16345
mRNA_7978: 16346 - K13341 PEX7, PTS2R peroxin-7, at 136,245 to 137,738
16346
mRNA_7979: 16347 - KOG0504 FOG Ankyrin repeat, at 137,884 to 138,763
16347
mRNA_7980: 16348 - KOG0550 Molecular chaperone (DnaJ superfamily), at 138,998 to 141,142
16348
mRNA_7981: 16349 - KOG2504 Monocarboxylate transporter, at 141,526 to 143,466
16349
Group
Condition
mRNA
_7977
mRNA
_7978
mRNA
_7979
mRNA
_7980
mRNA
_7981
16345
16346
16347
16348
16349
growth on oleic acid
YNB Oleic Acid
-0.6
-4.2
N.D.
-0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-3.3
N.D.
+0.0
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
-2.3
N.D.
-0.2
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-1.6
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.6
N.D.
+0.3
-0.1
growth on oleic acid
YNB Glucose
-1.0
+0.3
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.7
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.5
N.D.
-0.0
-0.4
auxotrophy
YNB Glucose
+0.4
-0.1
N.D.
-0.3
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.6
N.D.
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.6
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
+0.5
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.0
+0.3
auxotrophy
Dropout Complete
+0.3
-0.0
N.D.
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
N.D.
+0.1
+0.4
growth on ypd
YPD
-0.1
+0.8
N.D.
+0.1
+0.1
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