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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16349 and 16350 are separated by 835 nucleotides
16350 and 16351 are separated by 421 nucleotides
16351 and 16352 are separated by 269 nucleotides
16352 and 16353 are separated by 147 nucleotides
mRNA_7981: 16349 - KOG2504 Monocarboxylate transporter, at 141,526 to 143,466
16349
mRNA_7982: 16350 - KOG2504 Monocarboxylate transporter, at 144,302 to 146,236
16350
mRNA_7983: 16351 - K11495 CENPA histone H3-like centromeric protein A, at 146,658 to 147,555
16351
mRNA_7984: 16352 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 147,825 to 148,945
16352
mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149,093 to 150,954
16353
Group
Condition
mRNA
_7981
mRNA
_7982
mRNA
_7983
mRNA
_7984
mRNA
_7985
16349
16350
16351
16352
16353
growth on oleic acid
YNB Oleic Acid
-0.6
-0.3
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
N.D.
-0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.1
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
-0.6
+0.1
N.D.
-0.5
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.2
N.D.
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.0
N.D.
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
N.D.
-0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.0
N.D.
+0.0
+0.4
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.0
N.D.
+0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
+0.2
+0.1
auxotrophy
Dropout Complete
+0.0
+0.0
N.D.
+0.0
+0.1
growth on ypd
YPD
+0.1
-0.2
N.D.
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
N.D.
+0.0
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.3
N.D.
+0.5
-0.0
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