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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16352 and 16353 are separated by 147 nucleotides
16353 and 16354 are separated by 150 nucleotides
16354 and 16355 are separated by 571 nucleotides
16355 and 16356 are separated by 292 nucleotides
mRNA_7984: 16352 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 147,825 to 148,945
16352
mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149,093 to 150,954
16353
mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151,105 to 154,451
16354
mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155,023 to 156,185
16355
mRNA_7988: 16356 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 156,478 to 157,308
16356
Group
Condition
mRNA
_7984
mRNA
_7985
mRNA
_7986
mRNA
_7987
mRNA
_7988
16352
16353
16354
16355
16356
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
-0.0
-0.1
-0.2
auxotrophy
YNB Glucose
-0.5
+0.2
+0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.5
-0.2
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
-0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.0
-0.2
-0.1
auxotrophy
Dropout Complete
+0.0
+0.1
-0.0
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.5
+0.2
+0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
+0.1
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.3
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
+0.4
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.0
+0.0
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.4
-0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.6
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
+0.0
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.0
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.0
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
+0.1
+0.3
+0.0
growth on ypd
YPD
-0.0
+0.4
-0.0
+0.3
+0.1
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