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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16353 and 16354 are separated by 150 nucleotides
16354 and 16355 are separated by 571 nucleotides
16355 and 16356 are separated by 292 nucleotides
16356 and 16357 are separated by 644 nucleotides
mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149,093 to 150,954
16353
mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151,105 to 154,451
16354
mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155,023 to 156,185
16355
mRNA_7988: 16356 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 156,478 to 157,308
16356
mRNA_7989: 16357 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 157,953 to 158,694
16357
Group
Condition
mRNA
_7985
mRNA
_7986
mRNA
_7987
mRNA
_7988
mRNA
_7989
16353
16354
16355
16356
16357
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.0
+0.2
-0.4
-1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
-0.1
+0.1
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.2
+0.2
+0.0
-0.0
auxotrophy
Dropout Complete
+0.1
-0.0
+0.2
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.0
-0.1
-0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
-0.2
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.3
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.1
+0.0
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
+0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.1
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
+0.2
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.2
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.3
-0.1
+0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.2
+0.2
+0.1
growth on ypd
YPD
+0.4
-0.0
+0.3
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.3
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
-0.6
+0.3
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.1
-0.3
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
-0.2
-0.1
+1.1
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