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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16355 and 16356 are separated by 292 nucleotides
16356 and 16357 are separated by 644 nucleotides
16357 and 16358 are separated by 554 nucleotides
16358 and 16359 are separated by 1010 nucleotides
mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155,023 to 156,185
16355
mRNA_7988: 16356 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 156,478 to 157,308
16356
mRNA_7989: 16357 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 157,953 to 158,694
16357
mRNA_7990: 16358 - Hypothetical Protein, at 159,249 to 159,873
16358
mRNA_7991: 16359 - K02132 ATPeF1A, ATP5A1, ATP1 F-type H+-transporting ATPase subunit alpha, at 160,884 to 163,546
16359
Group
Condition
mRNA
_7987
mRNA
_7988
mRNA
_7989
mRNA
_7990
mRNA
_7991
16355
16356
16357
16358
16359
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-1.5
-1.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
-0.0
-1.9
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.6
-1.6
N.D.
auxotrophy
Dropout Complete
+0.2
-0.5
-0.2
-0.6
N.D.
auxotrophy
YNB Glucose
+0.1
-0.3
+0.1
-0.9
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.0
-0.2
-0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.9
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
-0.2
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.7
-1.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
+0.9
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
-0.3
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
+0.7
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.3
+0.8
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.4
+0.1
N.D.
growth on ypd
YPD
+0.3
+0.1
+0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+1.1
+0.1
N.D.
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