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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16366 and 16367 are separated by 134 nucleotides
16367 and 16368 are separated by 217 nucleotides
16368 and 16369 are separated by 233 nucleotides
16369 and 16370 are separated by 509 nucleotides
mRNA_7998: 16366 - KOG3156 Uncharacterized membrane protein, at 176,627 to 177,709
16366
mRNA_7999: 16367 - K10994 RAD9A cell cycle checkpoint control protein RAD9A, at 177,844 to 179,868
16367
mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180,086 to 183,760
16368
mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183,994 to 185,593
16369
mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186,103 to 188,392
16370
Group
Condition
mRNA
_7998
mRNA
_7999
mRNA
_8000
mRNA
_8001
mRNA
_8002
16366
16367
16368
16369
16370
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.6
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.1
-0.7
-0.2
growth on oleic acid
YNB Glucose
N.D.
-1.0
+0.0
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.9
-0.1
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.7
+0.3
+0.1
+0.3
auxotrophy
YNB Glucose
N.D.
-0.6
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
-0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.2
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
-0.4
-0.0
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
-0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.3
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.2
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.0
-0.3
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.0
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.0
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.0
-0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.0
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.0
-0.0
+1.0
+0.5
growth on ypd
YPD
N.D.
+1.4
+0.1
+0.1
+0.0
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