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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16368 and 16369 are separated by 233 nucleotides
16369 and 16370 are separated by 509 nucleotides
16370 and 16371 are separated by 1721 nucleotides
16371 and 16372 are separated by 254 nucleotides
mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180,086 to 183,760
16368
mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183,994 to 185,593
16369
mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186,103 to 188,392
16370
mRNA_8003: 16371 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 190,114 to 191,045
16371
mRNA_8004: 16372 - K06648 SWI6 regulatory protein SWI6, at 191,300 to 193,753
16372
Group
Condition
mRNA
_8000
mRNA
_8001
mRNA
_8002
mRNA
_8003
mRNA
_8004
16368
16369
16370
16371
16372
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.7
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.3
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.4
-0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.3
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
-0.2
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
-0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
+0.5
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
+0.7
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.1
+0.2
N.D.
auxotrophy
Dropout Complete
-0.0
+0.2
-0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
+0.6
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.3
-0.3
N.D.
growth on ypd
YPD
+0.1
+0.1
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+1.0
+0.5
-0.6
N.D.
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