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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16373 and 16374 are separated by 1276 nucleotides
16374 and 16375 are separated by 487 nucleotides
16375 and 16376 are separated by 1580 nucleotides
16376 and 16377 are separated by 469 nucleotides
mRNA_8005: 16373 - BLAST alpha- -mannosyltransferase alg11p [Moniliophthor..., at 194,577 to 195,838
16373
mRNA_8006: 16374 - Hypothetical Protein, at 197,115 to 197,847
16374
mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198,335 to 201,051
16375
mRNA_8008: 16376 - BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio..., at 202,632 to 203,729
16376
mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713
16377
Group
Condition
mRNA
_8005
mRNA
_8006
mRNA
_8007
mRNA
_8008
mRNA
_8009
16373
16374
16375
16376
16377
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.4
-0.7
-1.9
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
-0.8
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.1
-1.8
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-1.8
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+1.4
-2.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.3
-0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
+0.3
-0.8
N.D.
growth on ypd
YPD
+0.4
+0.2
+0.1
-1.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
+0.6
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.3
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.6
+0.5
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.2
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
-0.6
+0.7
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.1
+0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.4
+0.6
-0.1
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
+0.4
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
+0.7
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.4
-0.1
+0.8
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.7
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.6
-0.0
+1.3
N.D.
auxotrophy
Dropout Complete
+0.1
-0.6
+0.8
+0.9
N.D.
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