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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16375 and 16376 are separated by 1580 nucleotides
16376 and 16377 are separated by 469 nucleotides
16377 and 16378 are separated by 577 nucleotides
16378 and 16379 are separated by 384 nucleotides
mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198,335 to 201,051
16375
mRNA_8008: 16376 - BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio..., at 202,632 to 203,729
16376
mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713
16377
mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434
16378
mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967
16379
Group
Condition
mRNA
_8007
mRNA
_8008
mRNA
_8009
mRNA
_8010
mRNA
_8011
16375
16376
16377
16378
16379
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.4
-2.8
N.D.
-1.0
-1.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.8
-0.4
N.D.
-1.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.8
N.D.
-0.6
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.9
N.D.
-0.9
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-1.9
N.D.
+0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.7
N.D.
-1.4
+0.2
growth on ypd
YPD
+0.1
-1.3
N.D.
+0.2
+0.5
growth on oleic acid
YNB Glucose
+0.4
-0.1
N.D.
-0.4
-0.4
growth on oleic acid
YNB Oleic Acid
+0.7
-0.1
N.D.
-1.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.5
N.D.
+0.5
-0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.7
N.D.
-0.7
+1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.2
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose
+0.4
-0.1
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.1
N.D.
-2.0
+1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.8
N.D.
-1.0
+2.0
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.3
N.D.
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.2
N.D.
-1.1
+2.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
+1.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.8
N.D.
+0.8
+0.3
auxotrophy
Dropout Complete
+0.8
+0.9
N.D.
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+1.3
N.D.
+0.6
+2.1
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