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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16376 and 16377 are separated by 469 nucleotides
16377 and 16378 are separated by 577 nucleotides
16378 and 16379 are separated by 384 nucleotides
16379 and 16380 are separated by 304 nucleotides
mRNA_8008: 16376 - BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio..., at 202,632 to 203,729
16376
mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713
16377
mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434
16378
mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967
16379
mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609
16380
Group
Condition
mRNA
_8008
mRNA
_8009
mRNA
_8010
mRNA
_8011
mRNA
_8012
16376
16377
16378
16379
16380
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.8
N.D.
-1.0
-1.8
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-1.8
N.D.
-0.6
-0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
N.D.
-0.9
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-1.7
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
N.D.
+0.3
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.1
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-1.1
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
+0.5
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.4
-0.4
+0.5
growth on ypd
YPD
-1.3
N.D.
+0.2
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-2.0
+1.9
-0.2
growth on ricinoleic acid
YNB Glucose
-0.7
N.D.
-0.7
+1.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
N.D.
-1.0
+2.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
-1.4
+0.2
+0.4
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.4
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-1.1
+2.2
-0.2
auxotrophy
Dropout Complete
+0.9
N.D.
+0.5
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+1.4
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.8
N.D.
+0.8
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.3
N.D.
+0.6
+2.1
+0.0
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