Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16376 and 16377 are separated by 469 nucleotides16377 and 16378 are separated by 577 nucleotides16378 and 16379 are separated by 384 nucleotides16379 and 16380 are separated by 304 nucleotides mRNA_8008: 16376 - BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio..., at 202,632 to 203,729 16376 mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713 16377 mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609 16380
Group Condition mRNA_8008 mRNA_8009 mRNA_8010 mRNA_8011 mRNA_8012
16376 16377 16378 16379 16380
facs on lipid accumulation Sorted Low BODIPY Gate -2.8 N.D. -1.0 -1.8 +0.4
facs on lipid accumulation Sorted No BODIPY Gate -1.8 N.D. -0.6 -0.4 -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.9 N.D. -0.9 -0.3 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 N.D. -1.7 +0.1 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -1.9 N.D. +0.3 +0.5 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.2 N.D. -0.1 -0.4 -0.0
growth on oleic acid YNB Oleic Acid -0.1 N.D. -1.1 +0.1 +0.5
ypd buoyancy 40 hrs High Buoyancy -0.5 N.D. +0.5 -0.3 -0.3
growth on oleic acid YNB Glucose -0.1 N.D. -0.4 -0.4 +0.5
growth on ypd YPD -1.3 N.D. +0.2 +0.5 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. -2.0 +1.9 -0.2
growth on ricinoleic acid YNB Glucose -0.7 N.D. -0.7 +1.0 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8 N.D. -1.0 +2.0 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.7 N.D. -1.4 +0.2 +0.4
auxotrophy YNB Glucose -0.1 N.D. -0.2 +0.2 +0.2
auxotrophy YNB Glucose 75mM Methionine +0.3 N.D. +0.4 -0.6 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 N.D. -1.1 +2.2 -0.2
auxotrophy Dropout Complete +0.9 N.D. +0.5 -0.3 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. +1.4 -0.1 -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.8 N.D. +0.8 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +1.3 N.D. +0.6 +2.1 +0.0
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