Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
16377 and 16378 are separated by 577 nucleotides
16378 and 16379 are separated by 384 nucleotides
16379 and 16380 are separated by 304 nucleotides
16380 and 16381 are separated by 460 nucleotides
mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204,199 to 205,713
16377
mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434
16378
mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967
16379
mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609
16380
mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212,070 to 213,325
16381
Group
Condition
mRNA
_8009
mRNA
_8010
mRNA
_8011
mRNA
_8012
mRNA
_8013
16377
16378
16379
16380
16381
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
-0.3
-0.3
-1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-2.0
+1.9
-0.2
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.7
+0.1
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.6
-0.4
-0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.4
+0.2
+0.4
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-1.1
+0.1
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
-0.3
-0.3
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.4
-0.4
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-1.0
+2.0
-0.3
-0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.4
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.1
+2.2
-0.2
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.0
-1.8
+0.4
+2.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.5
+0.1
-0.6
auxotrophy
YNB Glucose
N.D.
-0.2
+0.2
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.7
+1.0
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.8
+0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.6
+0.2
+1.0
growth on ypd
YPD
N.D.
+0.2
+0.5
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+1.4
-0.1
-0.0
-0.3
auxotrophy
Dropout Complete
N.D.
+0.5
-0.3
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
+2.1
+0.0
+0.8
remove
mRNA_8009
plot
remove
mRNA_8010
plot
remove
mRNA_8011
remove
mRNA_8012
plot
remove
mRNA_8013
plot