Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16378 and 16379 are separated by 384 nucleotides16379 and 16380 are separated by 304 nucleotides16380 and 16381 are separated by 460 nucleotides16381 and 16382 are separated by 312 nucleotides mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206,291 to 207,434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212,070 to 213,325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213,638 to 214,851 16382
Group Condition mRNA_8010 mRNA_8011 mRNA_8012 mRNA_8013 mRNA_8014
16378 16379 16380 16381 16382
facs on lipid accumulation Sorted High BODIPY Gate -0.9 -0.3 -0.3 -1.5 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -2.0 +1.9 -0.2 -1.1 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -1.7 +0.1 +0.2 +0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.6 -0.4 -0.3 +0.4 -0.0
growth on oleic acid YNB Oleic Acid -1.1 +0.1 +0.5 +0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -1.4 +0.2 +0.4 +0.3 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.5 -0.3 -0.3 -0.3 -0.0
growth on oleic acid YNB Glucose -0.4 -0.4 +0.5 +0.0 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.0 +2.0 -0.3 -0.9 +0.0
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.4 -0.0 +0.5 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.5 +0.1 -0.6 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -1.0 -1.8 +0.4 +2.8 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.1 +2.2 -0.2 -0.7 +0.2
growth on ricinoleic acid YNB Glucose -0.7 +1.0 +0.3 +0.1 -0.1
auxotrophy YNB Glucose -0.2 +0.2 +0.2 +0.4 +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.8 +0.3 -0.1 -0.2 -0.0
growth on ypd YPD +0.2 +0.5 +0.2 +0.1 -0.0
ypd buoyancy 40 hrs Median Buoyancy +1.4 -0.1 -0.0 -0.3 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.4 -0.6 +0.2 +1.0 +0.3
auxotrophy Dropout Complete +0.5 -0.3 +0.2 +0.7 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.6 +2.1 +0.0 +0.8 +0.1
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