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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16379 and 16380 are separated by 304 nucleotides
16380 and 16381 are separated by 460 nucleotides
16381 and 16382 are separated by 312 nucleotides
16382 and 16383 are separated by 301 nucleotides
mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207,819 to 208,967
16379
mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609
16380
mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212,070 to 213,325
16381
mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213,638 to 214,851
16382
mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215,153 to 216,105
16383
Group
Condition
mRNA
_8011
mRNA
_8012
mRNA
_8013
mRNA
_8014
mRNA
_8015
16379
16380
16381
16382
16383
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
-1.5
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
-0.3
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
-0.6
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.4
+0.5
+0.0
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.2
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
+0.4
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.0
+0.5
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.5
+0.1
-0.1
-0.0
growth on ypd
YPD
+0.5
+0.2
+0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+2.0
-0.3
-0.9
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.9
-0.2
-1.1
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.2
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.2
+1.0
+0.3
+0.1
auxotrophy
Dropout Complete
-0.3
+0.2
+0.7
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
+0.4
+2.8
-0.1
-0.0
auxotrophy
YNB Glucose
+0.2
+0.2
+0.4
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
+0.3
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+1.0
+0.3
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+2.2
-0.2
-0.7
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+2.1
+0.0
+0.8
+0.1
-0.2
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