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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16385 and 16386 are separated by 911 nucleotides
16386 and 16387 are separated by 1896 nucleotides
16387 and 16388 are separated by 183 nucleotides
16388 and 16389 are separated by 82 nucleotides
mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506
16385
mRNA_8018: 16386 - Hypothetical Protein, at 220,418 to 221,008
16386
mRNA_8019: 16387 - Hypothetical Protein, at 222,905 to 224,449
16387
mRNA_8020: 16388 - K19841 STE50 protein STE50, at 224,633 to 227,369
16388
mRNA_8021: 16389 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51905, at 227,452 to 229,516
16389
Group
Condition
mRNA
_8017
mRNA
_8018
mRNA
_8019
mRNA
_8020
mRNA
_8021
16385
16386
16387
16388
16389
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.4
-2.6
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.1
-2.8
-0.4
auxotrophy
YNB Glucose
N.D.
+0.3
-0.1
-2.8
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.8
-1.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.2
-1.0
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.1
-1.8
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.1
-1.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.0
-1.3
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
-0.0
-1.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.4
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
+0.2
-1.4
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.1
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.6
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.7
+0.6
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.0
-0.0
-0.1
growth on ypd
YPD
N.D.
-0.1
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+1.1
-0.2
-0.7
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.2
-0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+1.0
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.0
+1.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.3
+1.0
+0.3
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