Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 16388 and 16389 are separated by 82 nucleotides16389 and 16390 are separated by 111 nucleotides16390 and 16391 are separated by 123 nucleotides16391 and 16392 are separated by 165 nucleotides mRNA_8020: 16388 - K19841 STE50 protein STE50, at 224,633 to 227,369 16388 mRNA_8021: 16389 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51905, at 227,452 to 229,516 16389 mRNA_8022: 16390 - BLAST Ubiquinone biosynthesis protein coq9, mitochondrial [..., at 229,628 to 230,640 16390 mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230,764 to 233,185 16391 mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233,351 to 234,544 16392
Group Condition mRNA_8020 mRNA_8021 mRNA_8022 mRNA_8023 mRNA_8024
16388 16389 16390 16391 16392
growth on ricinoleic acid YNB Methylricinoleic Acid -2.8 -0.4 N.D. -0.0 N.D.
auxotrophy YNB Glucose -2.8 +0.1 N.D. -0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -2.6 +0.3 N.D. -0.2 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -1.2 -0.2 N.D. -0.7 N.D.
growth on ricinoleic acid YNB Glucose -1.8 +0.2 N.D. -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine -1.4 -0.1 N.D. -0.1 N.D.
growth on oleic acid YNB Oleic Acid -1.3 +0.0 N.D. +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -1.2 +0.0 N.D. +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.6 -0.1 N.D. -0.3 N.D.
auxotrophy YNB Glucose 75mM Methionine -1.0 +0.3 N.D. -0.2 N.D.
auxotrophy Dropout Complete -1.1 +0.2 N.D. -0.0 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 -0.0 N.D. -0.1 N.D.
growth on oleic acid YNB Glucose -0.5 +0.0 N.D. -0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 -0.1 N.D. +0.0 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.3 N.D. +0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.1 N.D. -0.3 N.D.
growth on ypd YPD +0.2 -0.0 N.D. +0.0 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.1 N.D. +0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 -0.0 N.D. -0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy +1.3 -0.3 N.D. -0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy +1.0 +0.3 N.D. -0.3 N.D.
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