Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 16391 and 16392 are separated by 165 nucleotides16392 and 16393 are separated by 486 nucleotides16393 and 16394 are separated by 311 nucleotides16394 and 16395 are separated by 264 nucleotides mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230,764 to 233,185 16391 mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233,351 to 234,544 16392 mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235,031 to 239,261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239,573 to 243,561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243,826 to 244,717 16395
Group Condition mRNA_8023 mRNA_8024 mRNA_8025 mRNA_8026 mRNA_8027
16391 16392 16393 16394 16395
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 N.D. -0.3 -0.4 -0.7
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 N.D. -0.5 -0.0 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 N.D. -0.5 -0.2 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 N.D. -0.6 +0.0 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 N.D. -0.2 +0.0 -0.4
facs on lipid accumulation Sorted No BODIPY Gate -0.3 N.D. -0.3 +0.0 -0.0
growth on oleic acid YNB Glucose -0.1 N.D. -0.3 +0.0 -0.2
growth on ypd YPD +0.0 N.D. -0.1 -0.1 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.3 N.D. -0.1 +0.2 -0.2
auxotrophy YNB Glucose -0.2 N.D. -0.1 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 N.D. -0.4 -0.0 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. -0.4 +0.3 +0.0
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. -0.1 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. -0.1 +0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.3 N.D. -0.1 +0.3 +0.0
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. -0.2 +0.2 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. +0.0 +0.1 +0.0
growth on ricinoleic acid YNB Glucose -0.1 N.D. +0.1 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. -0.1 +0.2 -0.1
growth on oleic acid YNB Oleic Acid +0.1 N.D. +0.0 +0.0 -0.0
auxotrophy Dropout Complete -0.0 N.D. -0.1 +0.4 -0.0
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