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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16391 and 16392 are separated by 165 nucleotides
16392 and 16393 are separated by 486 nucleotides
16393 and 16394 are separated by 311 nucleotides
16394 and 16395 are separated by 264 nucleotides
mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230,764 to 233,185
16391
mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233,351 to 234,544
16392
mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235,031 to 239,261
16393
mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239,573 to 243,561
16394
mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243,826 to 244,717
16395
Group
Condition
mRNA
_8023
mRNA
_8024
mRNA
_8025
mRNA
_8026
mRNA
_8027
16391
16392
16393
16394
16395
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.3
-0.4
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
-0.5
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.5
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.6
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.2
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.3
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.3
+0.0
-0.2
growth on ypd
YPD
+0.0
N.D.
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
+0.2
-0.2
auxotrophy
YNB Glucose
-0.2
N.D.
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.4
-0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.4
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.0
+0.0
-0.0
auxotrophy
Dropout Complete
-0.0
N.D.
-0.1
+0.4
-0.0
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