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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16402 and 16403 are separated by 259 nucleotides
16403 and 16404 are separated by 550 nucleotides
16404 and 16405 are separated by 171 nucleotides
16405 and 16406 are separated by 172 nucleotides
mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272,460 to 275,670
16402
mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275,930 to 278,853
16403
mRNA_8036: 16404 - K01942 HLCS biotin--protein ligase, at 279,404 to 281,646
16404
mRNA_8037: 16405 - K14797 ENP1, BYSL essential nuclear protein 1, at 281,818 to 283,593
16405
mRNA_8038: 16406 - K05757 ARPC1A_B actin related protein 2/3 complex, subunit 1A/1B, at 283,766 to 285,253
16406
Group
Condition
mRNA
_8034
mRNA
_8035
mRNA
_8036
mRNA
_8037
mRNA
_8038
16402
16403
16404
16405
16406
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.6
-2.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
-0.5
-1.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
-1.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
-0.6
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.0
-1.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
-0.2
-1.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.8
-0.9
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.2
+0.6
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
+0.7
N.D.
N.D.
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