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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16410 and 16411 are separated by 211 nucleotides
16411 and 16412 are separated by 271 nucleotides
16412 and 16413 are separated by 334 nucleotides
16413 and 16414 are separated by 302 nucleotides
mRNA_8042: 16410 - K17408 DAP3, MRPS29 small subunit ribosomal protein S29, at 288,968 to 290,792
16410
mRNA_8043: 16411 - K15283 SLC35E1 solute carrier family 35, member E1, at 291,004 to 293,289
16411
mRNA_8044: 16412 - KOG4520 Predicted coiled-coil protein, at 293,561 to 294,571
16412
mRNA_8045: 16413 - Hypothetical Protein, at 294,906 to 295,366
16413
mRNA_8046: 16414 - BLAST myosin tail domain protein [Rhizoctonia solani AG-3 R..., at 295,669 to 297,549
16414
Group
Condition
mRNA
_8042
mRNA
_8043
mRNA
_8044
mRNA
_8045
mRNA
_8046
16410
16411
16412
16413
16414
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.8
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
N.D.
-0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
N.D.
+0.1
-0.3
growth on ypd
YPD
N.D.
-0.1
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.4
N.D.
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.6
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.8
N.D.
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
+0.5
N.D.
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.4
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.4
N.D.
+0.3
-0.1
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