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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16416 and 16417 are separated by 700 nucleotides
16417 and 16418 are separated by 536 nucleotides
16418 and 16419 are separated by 941 nucleotides
16419 and 16420 are separated by 473 nucleotides
mRNA_8048: 16416 - Hypothetical Protein, at 299,465 to 299,980
16416
mRNA_8049: 16417 - SUPERFAMILY--SSF52047, at 300,681 to 303,799
16417
mRNA_8050: 16418 - K02943 RP-LP2, RPLP2 large subunit ribosomal protein LP2, at 304,336 to 304,986
16418
mRNA_8051: 16419 - K02958 RP-S15e, RPS15 small subunit ribosomal protein S15e, at 305,928 to 306,584
16419
mRNA_8052: 16420 - KOG2372 Oxidation resistance protein, at 307,058 to 308,931
16420
Group
Condition
mRNA
_8048
mRNA
_8049
mRNA
_8050
mRNA
_8051
mRNA
_8052
16416
16417
16418
16419
16420
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.7
-0.2
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-2.6
-0.1
N.D.
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
-0.6
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.4
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.0
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
N.D.
N.D.
-0.4
growth on ypd
YPD
-0.3
+0.0
N.D.
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
N.D.
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.2
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
+0.4
+0.1
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.2
N.D.
N.D.
-0.1
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