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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16430 and 16431 are separated by 507 nucleotides
16431 and 16432 are separated by 296 nucleotides
16432 and 16433 are separated by 94 nucleotides
16433 and 16434 are separated by 685 nucleotides
mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329,647 to 331,079
16430
mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331,587 to 333,110
16431
mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333,407 to 335,918
16432
mRNA_8065: 16433 - KOG0732 AAA+-type ATPase containing the bromodomain, at 336,013 to 341,106
16433
mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341,792 to 345,856
16434
Group
Condition
mRNA
_8062
mRNA
_8063
mRNA
_8064
mRNA
_8065
mRNA
_8066
16430
16431
16432
16433
16434
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.8
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.2
N.D.
N.D.
growth on ypd
YPD
-0.5
+0.2
+0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.6
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
+0.3
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
+0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
+0.2
N.D.
N.D.
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