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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16433 and 16434 are separated by 685 nucleotides
16434 and 16435 are separated by 711 nucleotides
16435 and 16436 are separated by 257 nucleotides
16436 and 16437 are separated by 238 nucleotides
mRNA_8065: 16433 - KOG0732 AAA+-type ATPase containing the bromodomain, at 336,013 to 341,106
16433
mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341,792 to 345,856
16434
mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346,568 to 347,476
16435
mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347,734 to 349,027
16436
mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349,266 to 352,237
16437
Group
Condition
mRNA
_8065
mRNA
_8066
mRNA
_8067
mRNA
_8068
mRNA
_8069
16433
16434
16435
16436
16437
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-2.7
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.2
-0.5
+1.0
growth on ypd
YPD
N.D.
N.D.
-0.4
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
-0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.9
-0.3
+1.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.6
-0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
+0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.6
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.1
+0.5
auxotrophy
YNB Glucose
N.D.
N.D.
+0.5
-0.3
+0.6
auxotrophy
Dropout Complete
N.D.
N.D.
+1.0
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.7
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+1.0
-0.3
+0.4
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