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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16435 and 16436 are separated by 257 nucleotides
16436 and 16437 are separated by 238 nucleotides
16437 and 16438 are separated by 733 nucleotides
16438 and 16439 are separated by 782 nucleotides
mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346,568 to 347,476
16435
mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347,734 to 349,027
16436
mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349,266 to 352,237
16437
mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352,971 to 356,378
16438
mRNA_8071: 16439 - Hypothetical Protein, at 357,161 to 359,241
16439
Group
Condition
mRNA
_8067
mRNA
_8068
mRNA
_8069
mRNA
_8070
mRNA
_8071
16435
16436
16437
16438
16439
ypd buoyancy
40 hrs No Buoyancy Separation
-2.7
-0.2
+0.1
+0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
-0.5
+1.0
-0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
-0.1
+0.3
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
+0.5
-0.5
-0.8
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
+0.3
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.3
+0.4
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.1
+0.0
-0.1
growth on ypd
YPD
-0.4
-0.0
+0.1
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.3
-0.0
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.3
+1.0
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.5
+0.3
-0.2
+0.2
auxotrophy
YNB Glucose
+0.5
-0.3
+0.6
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.3
+0.2
+0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.4
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.0
+0.2
+0.7
-0.5
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
+0.7
-0.1
+0.3
auxotrophy
Dropout Complete
+1.0
-0.3
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.1
+0.3
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.0
-0.3
+0.4
-0.0
+0.3
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