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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16436 and 16437 are separated by 238 nucleotides
16437 and 16438 are separated by 733 nucleotides
16438 and 16439 are separated by 782 nucleotides
16439 and 16440 are separated by 365 nucleotides
mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347,734 to 349,027
16436
mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349,266 to 352,237
16437
mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352,971 to 356,378
16438
mRNA_8071: 16439 - Hypothetical Protein, at 357,161 to 359,241
16439
mRNA_8072: 16440 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 359,607 to 361,273
16440
Group
Condition
mRNA
_8068
mRNA
_8069
mRNA
_8070
mRNA
_8071
mRNA
_8072
16436
16437
16438
16439
16440
growth on oleic acid
YNB Oleic Acid
-0.4
+0.3
-0.1
-0.1
-0.6
growth on oleic acid
YNB Glucose
-0.3
+0.4
+0.0
-0.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
-0.5
-0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.3
-0.9
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.0
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.3
-0.2
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.0
-0.6
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
-0.3
-0.1
+0.7
auxotrophy
YNB Glucose
-0.3
+0.6
-0.5
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+1.0
-0.4
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
-0.0
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.1
+0.4
-0.1
growth on ypd
YPD
-0.0
+0.1
+0.2
-0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+1.0
+0.2
+0.0
-0.0
auxotrophy
Dropout Complete
-0.3
+0.2
+0.0
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.7
-0.5
+0.6
growth on ricinoleic acid
YNB Glucose
-0.3
+0.7
-0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.3
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.3
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.3
-0.5
+0.9
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