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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16442 and 16443 are separated by 409 nucleotides
16443 and 16444 are separated by 1203 nucleotides
16444 and 16445 are separated by 359 nucleotides
16445 and 16446 are separated by 194 nucleotides
mRNA_8074: 16442 - Hypothetical Protein, at 363,316 to 363,918
16442
mRNA_8075: 16443 - K13525 VCP, CDC48 transitional endoplasmic reticulum ATPase, at 364,328 to 367,178
16443
mRNA_8076: 16444 - Hypothetical Protein, at 368,382 to 369,179
16444
mRNA_8077: 16445 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 369,539 to 370,935
16445
mRNA_8078: 16446 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 371,130 to 372,195
16446
Group
Condition
mRNA
_8074
mRNA
_8075
mRNA
_8076
mRNA
_8077
mRNA
_8078
16442
16443
16444
16445
16446
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
N.D.
-0.6
-2.2
-1.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.1
+0.1
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
-0.1
-0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
+0.0
-0.7
+0.3
growth on ypd
YPD
-0.2
N.D.
-0.1
-0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
-0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
+0.2
-0.8
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.1
+0.3
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.1
-0.2
-0.1
auxotrophy
Dropout Complete
+0.0
N.D.
-0.1
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.1
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
+0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
-0.0
+0.1
+0.5
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