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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16450 and 16451 are separated by 197 nucleotides
16451 and 16452 are separated by 111 nucleotides
16452 and 16453 are separated by 675 nucleotides
16453 and 16454 are separated by 840 nucleotides
mRNA_8082: 16450 - BLAST zinc-binding oxidoreductase [Moesziomyces antarcticus..., at 378,453 to 379,519
16450
mRNA_8083: 16451 - K17774 MDM10 mitochondrial distribution and morphology protein 10, at 379,717 to 381,351
16451
mRNA_8084: 16452 - K05351 E1.1.1.9 D-xylulose reductase, at 381,463 to 383,498
16452
mRNA_8085: 16453 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 384,174 to 386,638
16453
mRNA_8086: 16454 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 387,479 to 389,690
16454
Group
Condition
mRNA
_8082
mRNA
_8083
mRNA
_8084
mRNA
_8085
mRNA
_8086
16450
16451
16452
16453
16454
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-1.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.9
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.4
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.4
N.D.
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.4
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.4
N.D.
+0.1
growth on ypd
YPD
N.D.
N.D.
-0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
N.D.
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.4
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.7
N.D.
-0.5
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