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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16454 and 16455 are separated by 1085 nucleotides
16455 and 16456 are separated by 296 nucleotides
16456 and 16457 are separated by 317 nucleotides
16457 and 16458 are separated by 167 nucleotides
mRNA_8086: 16454 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 387,479 to 389,690
16454
mRNA_8087: 16455 - ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 390,776 to 392,470
16455
mRNA_8088: 16456 - Hypothetical Protein, at 392,767 to 393,298
16456
mRNA_8089: 16457 - Hypothetical Protein, at 393,616 to 394,916
16457
mRNA_8090: 16458 - K12737 SDCCAG10 peptidyl-prolyl cis-trans isomerase SDCCAG10, at 395,084 to 397,372
16458
Group
Condition
mRNA
_8086
mRNA
_8087
mRNA
_8088
mRNA
_8089
mRNA
_8090
16454
16455
16456
16457
16458
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.7
N.D.
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
N.D.
-0.7
-0.4
growth on ypd
YPD
+0.0
-0.5
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.6
N.D.
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose
-0.3
+0.2
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
N.D.
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
N.D.
+0.7
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
+0.0
+0.4
growth on oleic acid
YNB Glucose
-0.0
-0.2
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
N.D.
+0.2
-0.1
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