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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16461 and 16462 are separated by 190 nucleotides
16462 and 16463 are separated by 507 nucleotides
16463 and 16464 are separated by 467 nucleotides
16464 and 16465 are separated by 333 nucleotides
mRNA_8093: 16461 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 402,120 to 403,069
16461
mRNA_8094: 16462 - K10775 PAL phenylalanine ammonia-lyase, at 403,260 to 405,803
16462
mRNA_8095: 16463 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 406,311 to 408,343
16463
mRNA_8096: 16464 - K13338 PEX1 peroxin-1, at 408,811 to 412,943
16464
mRNA_8097: 16465 - KOG0118 FOG RRM domain, at 413,277 to 414,722
16465
Group
Condition
mRNA
_8093
mRNA
_8094
mRNA
_8095
mRNA
_8096
mRNA
_8097
16461
16462
16463
16464
16465
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.5
-0.4
N.D.
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
-0.8
N.D.
-0.5
auxotrophy
YNB Glucose
-0.1
-0.1
-0.3
N.D.
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.3
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
+0.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.2
N.D.
-0.0
auxotrophy
Dropout Complete
+0.5
-0.0
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.2
-0.3
+0.3
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
+0.1
N.D.
+0.4
growth on ypd
YPD
+0.4
-0.4
+0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.4
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
+0.0
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
+1.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.2
+0.3
N.D.
+0.3
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