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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16463 and 16464 are separated by 467 nucleotides
16464 and 16465 are separated by 333 nucleotides
16465 and 16466 are separated by 494 nucleotides
16466 and 16467 are separated by 664 nucleotides
mRNA_8095: 16463 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 406,311 to 408,343
16463
mRNA_8096: 16464 - K13338 PEX1 peroxin-1, at 408,811 to 412,943
16464
mRNA_8097: 16465 - KOG0118 FOG RRM domain, at 413,277 to 414,722
16465
mRNA_8098: 16466 - Hypothetical Protein, at 415,217 to 416,223
16466
mRNA_8099: 16467 - HMMPfam-SUR7/PalI family-PF06687, at 416,888 to 417,757
16467
Group
Condition
mRNA
_8095
mRNA
_8096
mRNA
_8097
mRNA
_8098
mRNA
_8099
16463
16464
16465
16466
16467
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-1.9
-0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
-0.5
+0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.6
+0.1
-0.5
auxotrophy
YNB Glucose
-0.3
N.D.
-0.7
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.1
-0.3
-0.9
auxotrophy
Dropout Complete
-0.3
N.D.
-0.1
+0.3
-0.7
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.1
+0.1
-0.8
growth on ypd
YPD
+0.4
N.D.
+0.0
+0.7
-1.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.4
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.0
+0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.3
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-0.3
+0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.2
N.D.
+0.0
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.4
+0.3
+0.6
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