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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16470 and 16471 are separated by 607 nucleotides
16471 and 16472 are separated by 58 nucleotides
16472 and 16473 are separated by 423 nucleotides
16473 and 16474 are separated by 130 nucleotides
mRNA_8102: 16470 - Hypothetical Protein, at 420,636 to 421,256
16470
mRNA_8103: 16471 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 421,864 to 423,445
16471
mRNA_8104: 16472 - Hypothetical Protein, at 423,504 to 424,497
16472
mRNA_8105: 16473 - Hypothetical Protein, at 424,921 to 425,494
16473
mRNA_8106: 16474 - K13511 TAZ monolysocardiolipin acyltransferase, at 425,625 to 426,745
16474
Group
Condition
mRNA
_8102
mRNA
_8103
mRNA
_8104
mRNA
_8105
mRNA
_8106
16470
16471
16472
16473
16474
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
-0.0
-0.4
-2.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.8
-0.0
+0.1
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
-0.2
-0.1
-1.5
auxotrophy
Dropout Complete
-0.4
-0.6
+0.2
-0.0
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.6
+0.1
+0.1
-0.8
auxotrophy
YNB Glucose
+0.2
-0.4
-0.2
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
+0.0
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.3
+0.2
-0.6
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
+0.1
-0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.1
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.0
-0.0
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.2
+0.2
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
+0.7
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.5
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.1
-0.3
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
-0.0
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
+0.2
+0.1
+0.2
growth on ypd
YPD
+0.3
-0.1
+0.0
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.5
+0.2
+0.8
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