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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16471 and 16472 are separated by 58 nucleotides
16472 and 16473 are separated by 423 nucleotides
16473 and 16474 are separated by 130 nucleotides
16474 and 16475 are separated by 358 nucleotides
mRNA_8103: 16471 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 421,864 to 423,445
16471
mRNA_8104: 16472 - Hypothetical Protein, at 423,504 to 424,497
16472
mRNA_8105: 16473 - Hypothetical Protein, at 424,921 to 425,494
16473
mRNA_8106: 16474 - K13511 TAZ monolysocardiolipin acyltransferase, at 425,625 to 426,745
16474
mRNA_8107: 16475 - K01937 pyrG, CTPS CTP synthase, at 427,104 to 429,524
16475
Group
Condition
mRNA
_8103
mRNA
_8104
mRNA
_8105
mRNA
_8106
mRNA
_8107
16471
16472
16473
16474
16475
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
-0.4
-2.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-0.1
-1.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.0
+0.1
-0.8
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.1
+0.1
-0.8
N.D.
auxotrophy
Dropout Complete
-0.6
+0.2
-0.0
-0.6
N.D.
auxotrophy
YNB Glucose
-0.4
-0.2
-0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.0
-0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.0
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.0
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.2
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.1
-0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.0
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
-0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
+0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.4
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.7
+0.0
+0.3
N.D.
growth on ypd
YPD
-0.1
+0.0
+0.2
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.2
+0.8
N.D.
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