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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16473 and 16474 are separated by 130 nucleotides
16474 and 16475 are separated by 358 nucleotides
16475 and 16476 are separated by 337 nucleotides
16476 and 16477 are separated by 591 nucleotides
mRNA_8105: 16473 - Hypothetical Protein, at 424,921 to 425,494
16473
mRNA_8106: 16474 - K13511 TAZ monolysocardiolipin acyltransferase, at 425,625 to 426,745
16474
mRNA_8107: 16475 - K01937 pyrG, CTPS CTP synthase, at 427,104 to 429,524
16475
mRNA_8108: 16476 - K17637 EXOC2, SEC5 exocyst complex component 2, at 429,862 to 433,885
16476
mRNA_8109: 16477 - K00679 E2.3.1.158 phospholipid-diacylglycerol acyltransferase, at 434,477 to 437,050
16477
Group
Condition
mRNA
_8105
mRNA
_8106
mRNA
_8107
mRNA
_8108
mRNA
_8109
16473
16474
16475
16476
16477
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-2.1
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.5
N.D.
N.D.
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.8
N.D.
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.8
N.D.
N.D.
-0.7
growth on ricinoleic acid
YNB Glucose
-0.0
-0.6
N.D.
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
N.D.
N.D.
-1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
N.D.
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
N.D.
-0.8
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.2
N.D.
N.D.
-0.6
auxotrophy
Dropout Complete
-0.0
-0.6
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.5
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
N.D.
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.5
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.8
N.D.
N.D.
+0.1
growth on ypd
YPD
+0.2
+0.8
N.D.
N.D.
+0.1
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