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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16483 and 16484 are separated by 336 nucleotides
16484 and 16485 are separated by 389 nucleotides
16485 and 16486 are separated by 426 nucleotides
16486 and 16487 are separated by 295 nucleotides
mRNA_8115: 16483 - K03868 RBX1, ROC1 RING-box protein 1, at 452,309 to 453,227
16483
mRNA_8116: 16484 - K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase, at 453,564 to 454,690
16484
mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455,080 to 456,482
16485
mRNA_8118: 16486 - Hypothetical Protein, at 456,909 to 458,986
16486
mRNA_8119: 16487 - Hypothetical Protein, at 459,282 to 461,489
16487
Group
Condition
mRNA
_8115
mRNA
_8116
mRNA
_8117
mRNA
_8118
mRNA
_8119
16483
16484
16485
16486
16487
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-3.0
-0.2
+0.1
-2.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-3.7
+0.3
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-5.0
+0.9
-0.0
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-4.3
+0.8
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-3.7
+0.3
-0.3
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-2.5
-0.0
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-3.5
+0.6
+0.1
+0.4
auxotrophy
YNB Glucose
N.D.
-2.8
+0.7
-0.4
+0.6
auxotrophy
Dropout Complete
N.D.
-2.7
+0.9
-0.4
+0.2
growth on oleic acid
YNB Glucose
N.D.
-2.0
+0.4
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.1
+0.1
+0.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.5
+0.1
+0.8
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
+0.0
-0.0
-0.6
growth on oleic acid
YNB Oleic Acid
N.D.
-0.9
+0.6
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.2
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.2
+0.3
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.3
-0.3
-0.2
growth on ypd
YPD
N.D.
+0.4
+0.0
+0.3
-0.9
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.4
+0.3
-1.6
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.8
+0.2
+0.4
-0.2
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